{"version": "https://jsonfeed.org/version/1", "title": "Oregon State University Research HPC Documentation", "home_page_url": "https://docs.hpc.oregonstate.edu/", "feed_url": "https://docs.hpc.oregonstate.edu/feed_json_created.json", "description": "Oregon State University Research HPC portal and documentation web site.\n", "icon": null, "authors": [{"name": "Edward Davis"}], "language": "en", "items": [{"id": "https://docs.hpc.oregonstate.edu/cqls/presentations/2025-11-12-supercomputing/renv/library/macos/R-4.4/aarch64-apple-darwin20/renv/NEWS/", "url": "https://docs.hpc.oregonstate.edu/cqls/presentations/2025-11-12-supercomputing/renv/library/macos/R-4.4/aarch64-apple-darwin20/renv/NEWS/", "title": "renv 1.1.4", "content_html": "<h1>renv 1.1.4</h1>\n<ul>\n<li>Fixed an issue where <code>renv</code> could erroneously record packages installed\n  from Posit Package Manager snapshots as being installed from CRAN. ...</li>\n</ul>", "image": "https://docs.hpc.oregonstate.edu/assets/images/social/cqls/presentations/2025-11-12-supercomputing/renv/library/macos/R-4.4/aarch64-apple-darwin20/renv/NEWS.png", "date_published": "2026-01-30T20:06:00.024561+00:00", "authors": [], "tags": null}, {"id": "https://docs.hpc.oregonstate.edu/ceoas/jupyterhub/", "url": "https://docs.hpc.oregonstate.edu/ceoas/jupyterhub/", "title": "JupyterHub", "content_html": "<h1>CEOAS JupyterHub</h1>\n<p>For CEOAS users running Jupyter notebooks and other interactive software on the cluster, CEOAS has a JupyterHub server available to on-cam...</p>", "image": "https://docs.hpc.oregonstate.edu/assets/images/social/ceoas/jupyterhub.png", "date_published": "2026-01-25T04:42:26+00:00", "authors": [], "tags": null}, {"id": "https://docs.hpc.oregonstate.edu/ceoas/partitions/", "url": "https://docs.hpc.oregonstate.edu/ceoas/partitions/", "title": "Partitions", "content_html": "<h1>Partitions</h1>\n<p>The CEOAS partitions are summarized as follows:</p>\n<p>| partition | description |\n| --------- | ----------- |\n| ceoas | General-use partition for CE...</p>", "image": "https://docs.hpc.oregonstate.edu/assets/images/social/ceoas/partitions.png", "date_published": "2026-01-25T04:42:26+00:00", "authors": [], "tags": null}, {"id": "https://docs.hpc.oregonstate.edu/ceoas/software/", "url": "https://docs.hpc.oregonstate.edu/ceoas/software/", "title": "Software", "content_html": "<h1>CEOAS Software</h1>\n<p>Under construction. Please watch warmly until it is ready.</p>", "image": "https://docs.hpc.oregonstate.edu/assets/images/social/ceoas/software.png", "date_published": "2026-01-25T04:42:26+00:00", "authors": [], "tags": null}, {"id": "https://docs.hpc.oregonstate.edu/cqls/presentations/2025-10-31-HPC/index_files/libs/revealjs/plugin/reveal-chalkboard/", "url": "https://docs.hpc.oregonstate.edu/cqls/presentations/2025-10-31-HPC/index_files/libs/revealjs/plugin/reveal-chalkboard/", "title": "Chalkboard", "content_html": "<h1>Chalkboard</h1>\n<p>With this plugin you can add a chalkboard to reveal.js. The plugin provides two possibilities to include handwritten notes to your presentation...</p>", "image": "https://docs.hpc.oregonstate.edu/assets/images/social/cqls/presentations/2025-10-31-HPC/index_files/libs/revealjs/plugin/reveal-chalkboard/README.png", "date_published": "2025-11-06T00:10:10+00:00", "authors": [], "tags": null}, {"id": "https://docs.hpc.oregonstate.edu/cqls/gpu/", "url": "https://docs.hpc.oregonstate.edu/cqls/gpu/", "title": "Using GPUs on the CQLS infrastructure", "content_html": "<h1>Using GPUs on the CQLS infrastructure</h1>\n<p>GPU-enabled software can accelerate data analysis by orders of magnitude over CPUs. Currently only NVIDIA GPUs are\na...</p>", "image": "https://docs.hpc.oregonstate.edu/assets/images/social/cqls/gpu/index.png", "date_published": "2025-08-11T16:49:45+00:00", "authors": [], "tags": null}, {"id": "https://docs.hpc.oregonstate.edu/ceoas/", "url": "https://docs.hpc.oregonstate.edu/ceoas/", "title": "CEOAS Research Computing", "content_html": "<h1>CEOAS Research Computing</h1>\n<p><a href=\"./jupyterhub.md\">JupyterHub</a>\n<a href=\"./partitions.md\">Partitions</a>\n<a href=\"./software.md\">Software</a></p>", "image": "https://docs.hpc.oregonstate.edu/assets/images/social/ceoas/index.png", "date_published": "2025-02-13T23:16:51+00:00", "authors": [], "tags": null}, {"id": "https://docs.hpc.oregonstate.edu/coe/", "url": "https://docs.hpc.oregonstate.edu/coe/", "title": "COE Research Computing", "content_html": "<h1>COE Research Computing</h1>", "image": "https://docs.hpc.oregonstate.edu/assets/images/social/coe/index.png", "date_published": "2025-02-13T23:16:51+00:00", "authors": [], "tags": null}, {"id": "https://docs.hpc.oregonstate.edu/cqls/quick-start/", "url": "https://docs.hpc.oregonstate.edu/cqls/quick-start/", "title": "Welcome to the CQLS HPC Documentation Website", "content_html": "<h1>Welcome to the CQLS HPC Documentation Website</h1>\n<p>The Center for Quantitative Life Sciences (CQLS) has established a new\nhigh-performance computing (HPC) infr...</p>", "image": "https://docs.hpc.oregonstate.edu/assets/images/social/cqls/quick-start/index.png", "date_published": "2025-02-13T23:16:51+00:00", "authors": [], "tags": null}, {"id": "https://docs.hpc.oregonstate.edu/cqls/software/conda/", "url": "https://docs.hpc.oregonstate.edu/cqls/software/conda/", "title": "Using conda on the CQLS infrastructure", "content_html": "<h1>Using conda on the CQLS infrastructure</h1>\n<p>Our recommendation for new conda environments is to use the <a href=\"https://pixi.sh/latest/\">pixi</a> tool for managing new c...</p>", "image": "https://docs.hpc.oregonstate.edu/assets/images/social/cqls/software/conda/index.png", "date_published": "2024-10-23T00:09:02+00:00", "authors": [], "tags": null}, {"id": "https://docs.hpc.oregonstate.edu/cqls/software/conda/pixi/", "url": "https://docs.hpc.oregonstate.edu/cqls/software/conda/pixi/", "title": "Pixi", "content_html": "<h1>Using pixi in place of conda</h1>\n<p>Reference links:</p>\n<ul>\n<li><a href=\"https://pixi.sh/latest/switching_from/conda/\">https://pixi.sh/latest/switching_from/conda/</a></li>\n<li>&lt;https://pixi.sh/latest/features/environment/#activation...</li>\n</ul>", "image": "https://docs.hpc.oregonstate.edu/assets/images/social/cqls/software/conda/pixi.png", "date_published": "2024-10-23T00:09:02+00:00", "authors": [], "tags": null}, {"id": "https://docs.hpc.oregonstate.edu/cqls/announcements/20241016-gitlab/", "url": "https://docs.hpc.oregonstate.edu/cqls/announcements/20241016-gitlab/", "title": "CQLS Gitlab down time Thursday Oct, 17", "content_html": "<h1>CQLS Gitlab down time Thursday Oct, 17</h1>\n<h2>Update notice from Ken Lett, CQLS Infrastructure Mananger for Biocomputing</h2>\n<p>Hello CQLS Community,</p>\n<p>Due to techni...</p>", "image": "https://docs.hpc.oregonstate.edu/assets/images/social/cqls/announcements/20241016-gitlab.png", "date_published": "2024-10-17T00:59:56+00:00", "authors": [], "tags": null}, {"id": "https://docs.hpc.oregonstate.edu/cqls/software/singularity/", "url": "https://docs.hpc.oregonstate.edu/cqls/software/singularity/", "title": "Singularity", "content_html": "<h1>Using singularity images</h1>\n<p>The CQLS has installed <a href=\"https://docs.sylabs.io/guides/latest/user-guide/\">singularity</a> on compute nodes to facilitate\ncontaineriz...</p>", "image": "https://docs.hpc.oregonstate.edu/assets/images/social/cqls/software/singularity.png", "date_published": "2024-10-09T06:16:45+00:00", "authors": [], "tags": null}, {"id": "https://docs.hpc.oregonstate.edu/cqls/", "url": "https://docs.hpc.oregonstate.edu/cqls/", "title": "CQLS Research Computing", "content_html": "<h1>CQLS Research Computing</h1>\n<div class=\"grid cards\" markdown>\n\n-   :material-clock-fast:{ .lg .middle } **Quick Links**\n\n    ---\n\n    * [:material-connection:...", "image": "https://docs.hpc.oregonstate.edu/assets/images/social/cqls/index.png", "date_published": "2024-09-21T11:23:04+00:00", "authors": [], "tags": null}, {"id": "https://docs.hpc.oregonstate.edu/cqls/about/", "url": "https://docs.hpc.oregonstate.edu/cqls/about/", "title": "Why did you develop a new, distinct infrastructure?", "content_html": "<h1>Why did you develop a new, distinct infrastructure?</h1>\n<p>We had several goals in mind when deciding to move to a new infrastructure:</p>\n<ol>\n<li>Modernization</li>\n<li>Ease ...</li>\n</ol>", "image": "https://docs.hpc.oregonstate.edu/assets/images/social/cqls/about/index.png", "date_published": "2024-09-21T11:23:04+00:00", "authors": [], "tags": null}, {"id": "https://docs.hpc.oregonstate.edu/cqls/about/policies/", "url": "https://docs.hpc.oregonstate.edu/cqls/about/policies/", "title": "Policies", "content_html": "<h1>General Use Policies</h1>\n<p>All individuals using the CQLS infrastructure are required to adhere to\nappropriate data management, software licensing and the\n[Oreg...</p>", "image": "https://docs.hpc.oregonstate.edu/assets/images/social/cqls/about/policies.png", "date_published": "2024-09-21T11:23:04+00:00", "authors": [], "tags": null}, {"id": "https://docs.hpc.oregonstate.edu/cqls/bug/", "url": "https://docs.hpc.oregonstate.edu/cqls/bug/", "title": "Bioinformatics Users Group (BUG)", "content_html": "<h1>Bioinformatics Users Group (BUG)</h1>\n<p>The CQLS hosts bi-weekly bioinformatics users group meetings every Fall, Winter, and Spring term.</p>\n<p>We encourage folks of ...</p>", "image": "https://docs.hpc.oregonstate.edu/assets/images/social/cqls/bug/index.png", "date_published": "2024-09-21T11:23:04+00:00", "authors": [], "tags": null}, {"id": "https://docs.hpc.oregonstate.edu/cqls/bug/presentations/", "url": "https://docs.hpc.oregonstate.edu/cqls/bug/presentations/", "title": "Presentations", "content_html": "<h1>BUG Presentation Archive</h1>\n<p>This page will serve as a repository for BUG meetings. <em>It is currently under construction.</em></p>", "image": "https://docs.hpc.oregonstate.edu/assets/images/social/cqls/bug/presentations/index.png", "date_published": "2024-09-21T11:23:04+00:00", "authors": [], "tags": null}, {"id": "https://docs.hpc.oregonstate.edu/cqls/configuration/", "url": "https://docs.hpc.oregonstate.edu/cqls/configuration/", "title": "Configuration on the new HPC infrastructure", "content_html": "<h1>Configuration on the new HPC infrastructure</h1>\n<p>In order to better support multiple computing groups around campus as well as to support a heterogenous comput...</p>", "image": "https://docs.hpc.oregonstate.edu/assets/images/social/cqls/configuration/index.png", "date_published": "2024-09-21T11:23:04+00:00", "authors": [], "tags": null}, {"id": "https://docs.hpc.oregonstate.edu/cqls/configuration/dotfiles/", "url": "https://docs.hpc.oregonstate.edu/cqls/configuration/dotfiles/", "title": "Dotfiles", "content_html": "<h1>Dotfile overview</h1>\n<p><a href=\"https://en.wikipedia.org/wiki/Hidden_file_and_hidden_directory#Unix_and_Unix-like_environments\">Dotfiles</a>\ncontrol the configuration of y...</p>", "image": "https://docs.hpc.oregonstate.edu/assets/images/social/cqls/configuration/dotfiles.png", "date_published": "2024-09-21T11:23:04+00:00", "authors": [], "tags": null}]}